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Check compatibility
You can upgrade to OS X El Capitan from OS X Snow Leopard or later on any of the following Mac models. Your Mac also needs at least 2GB of memory and 8.8GB of available storage space.
MacBook introduced in 2009 or later, plus MacBook (13-inch, Aluminum, Late 2008)
MacBook Air introduced in late 2008 or later
MacBook Pro introduced in mid 2007 or later
Mac mini introduced in early 2009 or later
iMac introduced in mid 2007 or later
Mac Pro introduced in early 2008 or later
Xserve models introduced in early 2009
To find your Mac model, memory, storage space, and macOS version, choose About This Mac from the Apple menu . If your Mac isn't compatible with OS X El Capitan, the installer will let you know.
Make a backup
Before installing any upgrade, it’s a good idea to back up your Mac. Time Machine makes it simple, and other backup methods are also available. Learn how to back up your Mac.
Get connected
It takes time to download and install OS X, so make sure that you have a reliable Internet connection. If you're using a Mac notebook computer, plug it into AC power.
Download OS X El Capitan
For the strongest security and latest features, find out whether you can upgrade to macOS Catalina, the latest version of macOS.
If you still need OS X El Capitan, use this link: Download OS X El Capitan. A file named InstallMacOSX.dmg will download to your Mac.
Install the macOS installer
Double-click the downloaded file to open a window showing its contents. Then double-click the file within, named InstallMacOSX.pkg.
Follow the onscreen instructions, which will guide you through the steps necessary to install.
Begin installation
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After installation of the installer is complete, open the Applications folder on your Mac, then double-click the file named Install OS X El Capitan.
Click Continue and follow the onscreen instructions. You might find it easiest to begin installation in the evening so that it can complete overnight, if needed.
Allow installation to complete
Please allow installation to complete without putting your Mac to sleep or closing its lid. Your Mac might restart, show a progress bar, or show a blank screen several times as it installs both OS X and related updates to your Mac firmware.
Learn more
- OS X El Capitan won't install on top of a later version of macOS, but you can erase your disk first or install on another disk.
- You can use macOS Recovery to reinstall macOS.
From OS X Scientific Computing
Contents
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This is nothing more than a repackaged fink installation, combined with an automatic nightly build system. It should have the most current bleeding-edge pre-release. If you need something more current than what is in fink, or you just don't want to install fink, then use this.
By far the most straightforward way to compile Coot from sourcecode is to use the Fink package management system. Paul Emsley and I have invested considerable time into getting this to work well, and it is the best pathway to obtain the most stable version. Once you have a working fink installation, all you have to do is issue the command
whenever you require the latest version.
A more detailed description on how to install coot with fink is linked here.
If you have set up fink to use my pre-compiled debian binaries, you can speed up the process considerably. Just issue the command
A more detailed description on how to install a pre-compiled coot with fink is linked here. Be sure to use the so-called 'unstable' branch of fink to get the latest pre-releases of coot: How to Activate the Unstable Branch
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The official Coot Wiki is now part of the CCP4 wiki.This page deals with issues specific to installation on OS X.
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The fink package for coot recommends installing raster3d and/or povray. When this is set up, simply pressing on the 'F8' key on your keyboard will result in a ray-traced image of the display popping up in Preview. Preview in turn will let you enhance the image, as it comes out a bit subdued by default. The following screenshot shows how this enhancement works. (You can see I tweaked exposure slightly, and gamma a bit, and saturation a fair amount).
Click here or on the image above to see a full-sized screenshot.
I wrote a coot wrapper shell script that lets you convert xplor/cns maps on the fly (you need to install mapman first) and has a few other enhancements.
I also made a Coot OS X applet that allows you to drag and drop a cns/xplor or ccp4 mapfile or any other coot-compatable file (mtz or pdb file, for example). Using the File > Get Info dialog, you can program this applet to open all .map and all .mtz files, if you want to, making these files double-clickable.
Download the Applet (requires a separate working coot installation)
LCD Stereo: Zalman monitor
The least expensive and perhaps best option for stereographic display is the new Zalman LCD monitor.
Please refer to the COOT wiki page that describes how to set everything up.
Hardware Stereo
Please note: Apple broke stereo support in earlier versions of 10.5, but with 10.5.6, it is now reported to be working correctly.
Apple now supports stereo in a window with Apple's implementation of X11, so coot should be able to work with this if you have the appropriate hardware (CRT and video card, as well as transmitter and glasses). I do not, so I will have to leave this for someone who does.
To get this to work, you need to have the latest version of Apple's X11.app installed, and then each user needs to issue the following command:
Hardware stereo on coot requires you compile with gtkglext1. The fink version of coot forces you to do so, so it should just work.
Side-by-side crosseyed stereo
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As of version 0.2, coot can also have a side-by-side cross-eyed stereo display. Then all you have to do is cross your eyes and you see stereo. Never mind that this will destroy your vision and eye muscles, it works really well. I only got the map displayed on one side until Paul suggested including the following in my .coot(rc) startup file:
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The official Coot Wiki is now part of the CCP4 wiki.This page deals with issues specific to installation on OS X.
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